Man pages for ParhamLab/PeptidePCA
PCA using physicochemical properties of HLA

conv.featuresCreate converted feature matrix using a list of ligands and a...
conv.features.listCreate converted feature matrix using a list of list of...
convmat.24Amino acid conversion matrix with 24 properties
convmat.4Amino acid conversion matrix with 4 properties
LAPPPeptidePCA
ligands.4ALigand sequences from 4 HLA-A alleles
make.conv.tableRead in amino acid table
pep.pcaPerform PCA on HLA features
pep.pca.plotPlot LAPP PCA
read.ligandsRead in all ligand files in a folder
ParhamLab/PeptidePCA documentation built on June 29, 2018, 3:52 p.m.