add_inter_clusters_connections: Add connections between cluster nodes

In ParkerICI/scgraphs: Analyzing single-cell data using graphs

Description

This function takes an existing Scaffold map and adds connections between the cluster nodes

Usage

add_inter_clusters_connections(G, col.names, weight.factor)

Arguments

G	An igraph object, representing a Scaffold map, as returned by add_vertices_to_landmarks_graph
col.names	A vector of column names to be used for the comptation of similarities
weight.factor	Weight factor. The edge weights for the inter-cluster connections will be multiplied by this weight factor. This is useful in case one wants to weight the connections between the clusters differently from the connections between the clusters and the landmarks

Value

Returns an igraph object, representing a Scaffold map with inter-cluster connections

ParkerICI/scgraphs documentation built on April 30, 2021, 1:10 p.m.