add_vertices_to_landmarks_graph: Add cluster vertices to a landmark graph

In ParkerICI/scgraphs: Analyzing single-cell data using graphs

Description

Add cluster vertices to a landmark graph

Usage

add_vertices_to_landmarks_graph(
  G,
  tab.clustered,
  tab.landmarks,
  col.names,
  min.similarity = 0.5
)

Arguments

G	An igraph object representing the landmark graph
tab.clustered	A data.frame containing the clusters to be represented in the Scaffold map. Each row corresponds to a cluster, and each column to a different marker
tab.landmarks	A data.frame containing the data corresponding to the landmark nodes. Each row corresponds to a landmark, and each column to a different cluster
col.names	A character vector of column names to be used for the analysis (these must correspond to the names of the columns in tab.clustered)
min.similarity	The minimum similarity value to be used as threshold to filter out edges. See the documentation for get_distances_from_landmarks

Value

Returns a new igraph object with the added cluster vertices

ParkerICI/scgraphs documentation built on April 30, 2021, 1:10 p.m.