make_design: Make simplified design frames

In PavlidisLab/gemma.R: A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses

Make simplified design frames

Description

Using on the output of get_dataset_samples, this function creates a simplified design table, granting one column to each experimental variable

Usage

make_design(samples, metaType = "text")

Arguments

samples	An output from get_dataset_samples. The output should not be raw
metaType	Type of metadata to include in the output. "text", "uri" or "both"

Value

A data.frame including the design table for the dataset

Examples

samples <- get_dataset_samples('GSE46416') 
make_design(samples)

PavlidisLab/gemma.R documentation built on April 26, 2024, 7:50 p.m.