processAnnotations: Processes JSON as annotations

In PavlidisLab/gemma.R: A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses

Processes JSON as annotations

Description

Processes JSON as annotations

Usage

processAnnotations(d)

Arguments

d	The JSON to process

Value

A data table with information about the annotations of the queried dataset. A list if raw = TRUE.A 404 error if the given identifier does not map to any object.

The fields of the output data.table are:

• class.name: Name of the annotation class (e.g. organism part)

• class.URI: URI for the annotation class

• term.name: Name of the annotation term (e.g. lung)

• term.URI: URI for the annotation term

• object.class: Class of object that the term originated from.

PavlidisLab/gemma.R documentation built on April 16, 2024, 1:44 p.m.