processGeneLocation: Processes JSON as a vector of gene locations

In PavlidisLab/gemma.R: A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses

Processes JSON as a vector of gene locations

Description

Processes JSON as a vector of gene locations

Usage

processGeneLocation(d)

Arguments

d	The JSON to process

Value

A data table with information about the physical location of the queried gene. A list if raw = TRUE. A 404 error if the given identifier does not map to any object.

The fields of the output data.table are:

• chromosome: Name of the chromosome the gene is located

• strand: Which strand the gene is located

• nucleotide: Nucleotide number for the gene

• length: Gene length

• taxon.name: Name of the taxon

• taxon.scientific: Scientific name for the taxon

• taxon.ID: Internal ID for the taxon given by Gemma

• taxon.NCBI: NCBI ID for the taxon

• taxon.database.name: Name of the database used in Gemma for the taxon

PavlidisLab/gemma.R documentation built on Oct. 25, 2024, 10:59 a.m.