processPlatforms: Processes JSON as a vector of platforms

In PavlidisLab/gemma.R: A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses

Processes JSON as a vector of platforms

Description

Processes JSON as a vector of platforms

Usage

processPlatforms(d)

Arguments

d	The JSON to process

Value

A data table with information about the platform(s). A list if raw = TRUE. A 404 error if the given identifier does not map to any object

The fields of the output data.table are:

• platform.ID: Internal identifier of the platform

• platform.shortName: Shortname of the platform.

• platform.name: Full name of the platform.

• platform.description: Free text description of the platform

• platform.troubled: Whether or not the platform was marked "troubled" by a Gemma process or a curator

• platform.experimentCount: Number of experiments using the platform within Gemma

• platform.type: Technology type for the platform.

• taxon.name: Name of the species platform was made for

• taxon.scientific: Scientific name for the taxon

• taxon.ID: Internal identifier given to the species by Gemma

• taxon.NCBI: NCBI ID of the taxon

• taxon.database.name: Underlying database used in Gemma for the taxon

• taxon.database.ID: ID of the underyling database used in Gemma for the taxon

PavlidisLab/gemma.R documentation built on April 16, 2024, 1:44 p.m.