processQuantitationTypeValueObject: processQuantitationTypeValueObject

In PavlidisLab/gemma.R: A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses

processQuantitationTypeValueObject

Description

processQuantitationTypeValueObject

Usage

processQuantitationTypeValueObject(d)

Arguments

d	The JSON to process

Value

A data.table containing the quantitation types

The fields of the output data.table are:

• id: If of the quantitation type. Any raw quantitation type can be accessed by get_dataset_raw_expression function using this id.

• name: Name of the quantitation type

• description: Description of the quantitation type

• type: Type of the quantitation type. Either raw or processed. Each dataset will have one processed quantitation type which is the data returned using get_dataset_processed_expression

• ratio: Whether or not the quanitation type is a ratio of multiple quantitation types. Typically TRUE for processed TWOCOLOR quantitation type.

• preferred: The preferred raw quantitation type. This version is used in generation of the processed data within gemma.

• recomputed: If TRUE this quantitation type is generated by recomputing raw data files Gemma had access to.

PavlidisLab/gemma.R documentation built on May 1, 2024, 10:48 p.m.