Files in PavlidisLab/markerGeneProfile
Cell type marker gene profiles in whole tissue samples
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/dataDocumentation.R
R/import.R
R/markerGeneSelection.R
R/mgpEstimation.R
R/mostVariable.R
R/ogboxFunctions.R
R/regionize.R
README.Rmd
README.md
README_files/RotSel/All_CellType/Cell A
README_files/RotSel/All_CellType/Cell B
README_files/RotSel/All_CellType/Cell C
README_files/RotSel/CellType/Cell A
README_files/RotSel/CellType/Cell B
README_files/RotSel/CellType/Cell C
README_files/RotSel/Region 2_CellType/Cell B
README_files/RotSel/Region 2_CellType/Cell C
README_files/Rotation/1/All_CellType/Cell A
README_files/Rotation/1/All_CellType/Cell B
README_files/Rotation/1/All_CellType/Cell C
README_files/Rotation/1/All_CellType/removed
README_files/Rotation/1/CellType/Cell A
README_files/Rotation/1/CellType/Cell B
README_files/Rotation/1/CellType/Cell C
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README_files/Rotation/1/Region 2_CellType/Cell B
README_files/Rotation/1/Region 2_CellType/Cell C
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README_files/Rotation/10/All_CellType/Cell A
README_files/Rotation/10/All_CellType/Cell B
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README_files/Rotation/10/CellType/Cell B
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README_files/Rotation/10/Region 2_CellType/Cell B
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README_files/Rotation/2/All_CellType/Cell A
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README_files/Rotation/2/CellType/Cell A
README_files/Rotation/2/CellType/Cell B
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README_files/Rotation/2/Region 2_CellType/Cell B
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README_files/Rotation/3/All_CellType/Cell A
README_files/Rotation/3/All_CellType/Cell B
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README_files/Rotation/3/CellType/Cell A
README_files/Rotation/3/CellType/Cell B
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README_files/Rotation/3/Region 2_CellType/Cell B
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README_files/Rotation/4/All_CellType/Cell A
README_files/Rotation/4/All_CellType/Cell B
README_files/Rotation/4/All_CellType/Cell C
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README_files/Rotation/4/CellType/Cell A
README_files/Rotation/4/CellType/Cell B
README_files/Rotation/4/CellType/Cell C
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README_files/Rotation/4/Region 2_CellType/Cell B
README_files/Rotation/4/Region 2_CellType/Cell C
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README_files/Rotation/5/All_CellType/Cell A
README_files/Rotation/5/All_CellType/Cell B
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README_files/Rotation/5/CellType/Cell A
README_files/Rotation/5/CellType/Cell B
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README_files/Rotation/5/Region 2_CellType/Cell B
README_files/Rotation/5/Region 2_CellType/Cell C
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README_files/Rotation/6/All_CellType/Cell A
README_files/Rotation/6/All_CellType/Cell B
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README_files/Rotation/6/CellType/Cell A
README_files/Rotation/6/CellType/Cell B
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README_files/Rotation/6/Region 2_CellType/Cell B
README_files/Rotation/6/Region 2_CellType/Cell C
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README_files/Rotation/7/All_CellType/Cell A
README_files/Rotation/7/All_CellType/Cell B
README_files/Rotation/7/All_CellType/Cell C
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README_files/Rotation/7/CellType/Cell A
README_files/Rotation/7/CellType/Cell B
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README_files/Rotation/7/Region 2_CellType/Cell B
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README_files/Rotation/8/All_CellType/Cell A
README_files/Rotation/8/All_CellType/Cell B
README_files/Rotation/8/All_CellType/Cell C
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README_files/Rotation/8/CellType/Cell A
README_files/Rotation/8/CellType/Cell B
README_files/Rotation/8/CellType/Cell C
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README_files/Rotation/8/Region 2_CellType/Cell B
README_files/Rotation/8/Region 2_CellType/Cell C
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README_files/Rotation/9/All_CellType/Cell A
README_files/Rotation/9/All_CellType/Cell B
README_files/Rotation/9/All_CellType/Cell C
README_files/Rotation/9/All_CellType/removed
README_files/Rotation/9/CellType/Cell A
README_files/Rotation/9/CellType/Cell B
README_files/Rotation/9/CellType/Cell C
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README_files/Rotation/9/Region 2_CellType/Cell B
README_files/Rotation/9/Region 2_CellType/Cell C
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README_files/figure-markdown_github/unnamed-chunk-17-1.png
README_files/figure-markdown_github/unnamed-chunk-19-1.png
README_files/figure-markdown_github/unnamed-chunk-23-1.png
README_files/figure-markdown_github/unnamed-chunk-23-2.png
README_files/quickSelection/All_CellType/Cell A
README_files/quickSelection/All_CellType/Cell B
README_files/quickSelection/All_CellType/Cell C
README_files/quickSelection/CellType/Cell A
README_files/quickSelection/CellType/Cell B
README_files/quickSelection/CellType/Cell C
README_files/quickSelection/Region 2_CellType/Cell B
README_files/quickSelection/Region 2_CellType/Cell C
data/mgp_LesnickParkinsonsExp.rda
data/mgp_LesnickParkinsonsMeta.rda
data/mgp_sampleProfiles.rda
data/mgp_sampleProfilesMeta.rda
data/mouseCellColor.rda
data/mouseMarkerGenes.rda
data/mouseMarkerGenesCombined.rda
data/mouseMarkerGenesCombinedNCBI.rda
data/mouseMarkerGenesNCBI.rda
data/mouseMarkerGenesPyramidalDeep.rda
data/mouseMarkerGenesPyramidalDeepNCBI.rda
data/mouseRegionHierarchy.rda
data/mpg_sampleRegionHiearchy.rda
man/findGene.Rd
man/fullEstimate.Rd
man/geom_boxvio.Rd
man/groupRotations.Rd
man/list.Rd
man/markerCandidates.Rd
man/memoReg.Rd
man/mgpEstimate.Rd
man/mgp_LesnickParkinsonsExp.Rd
man/mgp_LesnickParkinsonsMeta.Rd
man/mgp_sampleProfiles.Rd
man/mgp_sampleProfilesMeta.Rd
man/mostVariable.Rd
man/mouseMarkerGenes.Rd
man/mpg_sampleRegionHiearchy.Rd
man/nametree.Rd
man/pickMarkers.Rd
man/plotEstimates.Rd
man/reexports.Rd
man/regionize.Rd
man/replaceElement.Rd
man/scale01.Rd
man/scaleToInt.Rd
man/sepExpr.Rd
man/subset-.result.Rd
man/toColor.Rd
markerGeneProfile.Rproj
process/process.R
tests/testthat.R
tests/testthat/Cortex_PyramidalDeep/Astrocyte
tests/testthat/Cortex_PyramidalDeep/GabaPV
tests/testthat/Cortex_PyramidalDeep/GabaRelnCalb
tests/testthat/Cortex_PyramidalDeep/GabaVIPReln
tests/testthat/Cortex_PyramidalDeep/Microglia
tests/testthat/Cortex_PyramidalDeep/Oligo
tests/testthat/Cortex_PyramidalDeep/PyramidalCorticoThalam
tests/testthat/Cortex_PyramidalDeep/Pyramidal_Glt_25d2
tests/testthat/Cortex_PyramidalDeep/Pyramidal_S100a10
tests/testthat/n_expressoSamples.rda
tests/testthat/test_estimation.R
tests/testthat/test_geneSelection.R
tests/testthat/test_regionize.R
