plotEstimates: Plot cell type profile estimates

In PavlidisLab/markerGeneProfile: Cell type marker gene profiles in whole tissue samples

Description

A convenience function to plot the estimates

Usage

plotEstimates(estimates, groups, plotNames = NULL,
  sigTest = wilcox.test, pAdjMethod = stats::p.adjust.methods,
  comparisons = "all")

Arguments

groups	A names list of groups $groups part pf the mgpEstimate function's output
plotNames	a vector of strings. full address of the plots
sigTest	function to be used in calculation of p values for comparisons
pAdjMethod	character. which method to use when adjusting p values for multiple testing correction
comparisons	a 2 by n matrix that includes group name pairs, indicating which groups should be compared when calculating the p values. or "all" which will make comparison between all available groups by setting it to combn(groups,2)
estimates.	a named list of cell type estimates. $estimates part of the mgpEstimate function's output.

PavlidisLab/markerGeneProfile documentation built on July 11, 2019, 11:42 p.m.