regionize: Create cell type annotations per region.

In PavlidisLab/markerGeneProfile: Cell type marker gene profiles in whole tissue samples

Description

For each brain region, based on a defined hierarchy, it choses which samples to take in

Usage

regionize(design, regionNames, groupNames, regionHierarchy = NULL)

Arguments

design	A data.frame containing the design information
regionNames	a string naming the column of the design table that indicates the region names
groupNames	a string vector naming the columns of the design table that indicates cell type naming schemes.
regionHierarchy	a list of lists that represents the region hierarchy.

Value

A list containing character vectors that annotates samples. If the sample will not be considered for the region it will be represented as an NA, otherwise it'll have the cell type name indicated in the region

PavlidisLab/markerGeneProfile documentation built on July 11, 2019, 11:42 p.m.