analysis/01.SelectGenes/Markers_1.0/README.md

In PavlidisLab/neuroExpressoAnalysis: Marker genes of brain cell types and their use in analysis of whole tissue data

Markers_1.0

• Gene Symbols
  • mouseMarkerGenes: Genes selected by combining pyramidal sub-types into a single group (JSON, TSV, RDS, Excel, Zip).
  • pyramidalDeep: Genes selected by considering pyramidal sub-types as distinct cell types (JSON, TSV, RDS, Excel, Zip).
  • Combined: pyramidalDeep with pan-pyramidal gene list from mouseMarkerGenes included. This list is used in downstream analysis in the paper (JSON, TSV, RDS, Excel, Zip).
• NCBI ids
  • mouseMarkerGenes: (JSON, TSV, RDS, Excel, Zip).
  • pyramidalDeep: (JSON, TSV, RDS, Excel, Zip).
  • Combined: (JSON, TSV, RDS, Excel, Zip).

PavlidisLab/neuroExpressoAnalysis documentation built on Aug. 23, 2022, 7:42 a.m.