analysis/00.DownloadPreprocess/6.AllowedS100a10.R
In PavlidisLab/neuroExpressoAnalysis: Marker genes of brain cell types and their use in analysis of whole tissue data
library(XLConnect)
download.file("http://www.cell.com/cms/attachment/2021775604/2041641016/mmc1.zip",
destfile='data-raw/Mouse_Cell_Type_Data//s100a10AllowedProbes.zip')
system('unzip data-raw/Mouse_Cell_Type_Data/s100a10AllowedProbes.zip -d data-raw/Mouse_Cell_Type_Data')
probes = loadWorkbook('data-raw/Mouse_Cell_Type_Data/cell_6244_mmc1.xlsx')
probes = readWorksheet(probes, sheet = 1, header = TRUE)
allowedProbesS100a10 = probes$Probe.Set.ID %>% gemmaGeneMatch(chipFile='data-raw/GemmaAnnots/GPL1261') %>% unique
devtools::use_data(allowedProbesS100a10, overwrite = TRUE)
PavlidisLab/neuroExpressoAnalysis documentation built on Aug. 23, 2022, 7:42 a.m.
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library(XLConnect)
download.file("http://www.cell.com/cms/attachment/2021775604/2041641016/mmc1.zip",
destfile='data-raw/Mouse_Cell_Type_Data//s100a10AllowedProbes.zip')
system('unzip data-raw/Mouse_Cell_Type_Data/s100a10AllowedProbes.zip -d data-raw/Mouse_Cell_Type_Data')
probes = loadWorkbook('data-raw/Mouse_Cell_Type_Data/cell_6244_mmc1.xlsx')
probes = readWorksheet(probes, sheet = 1, header = TRUE)
allowedProbesS100a10 = probes$Probe.Set.ID %>% gemmaGeneMatch(chipFile='data-raw/GemmaAnnots/GPL1261') %>% unique
devtools::use_data(allowedProbesS100a10, overwrite = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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