build_anndata: Create anndata object from single cell expression matrix,...

In PelzKo/immunedeconv2: Second generation methods for immune cell deconvolution

Create anndata object from single cell expression matrix, cell type labels and gene symbols

Description

Create anndata object from single cell expression matrix, cell type labels and gene symbols

Usage

build_anndata(x, obs, var, obsm = NULL, varm = NULL)

Arguments

x	single cell expression matrix, rows = genes, columns = samples
obs	vector of cell type labels
var	vector of gene symbols
obsm	Key-indexed multi-dimensional observations annotation of length #observations.
varm	Key-indexed multi-dimensional variables annotation of length #variables.

Value

AnnData object

PelzKo/immunedeconv2 documentation built on Feb. 12, 2025, 4:16 p.m.