build_model_momf: Calculates the signature model with MOMF
In PelzKo/immunedeconv2: Second generation methods for immune cell deconvolution
build_model_momf R Documentation
Calculates the signature model with MOMF
Description
Calculates the signature model with MOMF
Usage
build_model_momf(
single_cell_object,
cell_type_annotations,
bulk_gene_expression
)
Arguments
single_cell_object
A matrix with the single-cell data. Rows are genes, columns are
samples. Row and column names need to be set.
cell_type_annotations
A vector of the cell type annotations. Has to be in the same order
as the samples in single_cell_object.
bulk_gene_expression
A matrix of bulk data. Rows are genes, columns are samples. Row and
column names need to be set.
Value
The signature matrix. Rows are genes, columns are cell types.
PelzKo/immunedeconv2 documentation built on Feb. 12, 2025, 4:16 p.m.
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| build_model_momf | R Documentation |
Calculates the signature model with MOMF
Description
Calculates the signature model with MOMF
Usage
build_model_momf(
single_cell_object,
cell_type_annotations,
bulk_gene_expression
)
Arguments
single_cell_object |
A matrix with the single-cell data. Rows are genes, columns are samples. Row and column names need to be set. |
cell_type_annotations |
A vector of the cell type annotations. Has to be in the same order as the samples in single_cell_object. |
bulk_gene_expression |
A matrix of bulk data. Rows are genes, columns are samples. Row and column names need to be set. |
Value
The signature matrix. Rows are genes, columns are cell types.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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