deconvolute_scaden: Performs deconvolution with Scaden

In PelzKo/immunedeconv2: Second generation methods for immune cell deconvolution

Performs deconvolution with Scaden

Description

Performs deconvolution with Scaden

Usage

deconvolute_scaden(
  signature,
  bulk_gene_expression,
  temp_dir = NULL,
  verbose = FALSE
)

Arguments

signature	Path to the model directory
bulk_gene_expression	A matrix of bulk data. Rows are genes, columns are samples. Row and column names need to be set.
temp_dir	The temporary directory to use for the computations (optional)
verbose	Whether to produce an output on the console (default: false).

Value

A matrix of cell type proportion estimates with cell types as rows and individuals as columns.

PelzKo/immunedeconv2 documentation built on Feb. 12, 2025, 4:16 p.m.