createFrequencyMat: Create frequency matrix
In PengyiYang/PhosR: A set of methods and tools for comprehensive analysis of phosphoproteomics data
Description
Usage
Arguments
Value
Examples
Description
Create frequency matrix
Usage
1
createFrequencyMat(substrates.seq)
Arguments
substrates.seq
A substrate sequence
Value
A frequency matrix of amino acid from substrates.seq.
Examples
1
2
3
4
5
6
7
data("phospho_L6_ratio")
# We will create a frequency matrix of Tfg S198 phosphosite.
rownames(phospho.L6.ratio)[1]
substrate.seq = unlist(lapply(strsplit(rownames(phospho.L6.ratio)[1],
split = "~"), function(i) i[4]))
freq.mat = createFrequencyMat(substrate.seq)
PengyiYang/PhosR documentation built on June 21, 2020, 8:37 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Create frequency matrix
Usage
1 | createFrequencyMat(substrates.seq)
|
Arguments
substrates.seq |
A substrate sequence |
Value
A frequency matrix of amino acid from substrates.seq.
Examples
1 2 3 4 5 6 7 | data("phospho_L6_ratio")
# We will create a frequency matrix of Tfg S198 phosphosite.
rownames(phospho.L6.ratio)[1]
substrate.seq = unlist(lapply(strsplit(rownames(phospho.L6.ratio)[1],
split = "~"), function(i) i[4]))
freq.mat = createFrequencyMat(substrate.seq)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.