acq2hdf5: Calls the acq2hdf5 command (python bioread package) to...

In PennStateDEPENdLab/experiment_pipeline: Generates data markdown for NeuroMap Task

Calls the acq2hdf5 command (python bioread package) to convert an acq file to an hdf5 file

Description

This is an R wrapper around the acq2hdf5 python command. It also supports output directory specification

Usage

acq2hdf5(
  acq_files,
  acq2hdf5_opts = "--compress=gzip",
  hdf5_output_dir = NULL,
  acq2hdf5_location = NULL
)

Arguments

acq_files	Character vector of acq files to convert to hdf5.
acq2hdf5_opts	Command line options passed to acq2hdf5. Default: "–missing-as=."
hdf5_output_dir	Directory for converted hdf5 files. Will be created if it does not exist.
acq2hdf5_location	The full path to the acq2hdf5 command. If not provided, this function will use the which/where command to look in the system path.
gzip_hdf5	A logical (TRUE/FALSE) indicating whether to gzip hdf5 files after conversion. Default: TRUE

Details

Note: the acq2hdf5 function is far faster than acq2hdf5 and also produces a much smaller file! In general, I would recommend that command for handling Acqknowledge files

PennStateDEPENdLab/experiment_pipeline documentation built on Nov. 27, 2024, 4:56 a.m.