ep.eye_setup_proc_config: Read and setup processing configuration

In PennStateDEPENdLab/experiment_pipeline: Generates data markdown for NeuroMap Task

Read and setup processing configuration

Description

Validates and imports processing configuration options into the environment for later use. Implements default configuration options if missing from YAML.

Usage

ep.eye_setup_proc_config(edf_raw, config_path, header = NULL)

Arguments

config_path	Path to corresponding .yml configuration file with processing instructions. Instructions on how to effectively set up a configuration file can be found [HERE].
file	Path to the .edf file to process.

Details

Also generates new log file using sink(), and sets up a new directory for preprocessed output if it does not already exist.

Value

Nested list with processing options pulled from .yml configuration file.

Author(s)

Nate Hall

importFrom stringr str_extract importFrom yaml read_yaml importFrom nate.utils print_tree

Examples

 ## Not run: 
   config <- setup_proc_configs("/proj/mnhallqlab/studies/NeuroMAP/s3_data/Neighborhood_PSU/eye/002_HS_Neighborhood_Eye.edf", "/proj/mnhallqlab/studies/NeuroMAP/s3_data_ep_specs/yaml/Neighborhood_PSU.yaml")
 
## End(Not run)

PennStateDEPENdLab/experiment_pipeline documentation built on Nov. 27, 2024, 4:56 a.m.