Man pages for PerkinElmer/phenoptr
inForm Helper Functions
| compute_all_nearest_distance | Nearest neighbors from a file. |
| count_touching_cells | Find and count touching cells for pairs of phenotypes. |
| count_within | Count cells within a radius for a single field. |
| count_within_batch | Count cells within a radius for multiple tissue categories,... |
| density_at_distance | Estimate cell density at distance from a tissue boundary. |
| density_bands | Estimate cell density in bands from a tissue boundary. |
| distance_matrix | Create a distance matrix from cell seg data. |
| find_nearest_distance | Nearest neighbor distances for each cell and phenotype. |
| get_field_info | Read information about a field from a component image file. |
| list_cell_seg_files | Find inForm data files. |
| parse_phenotypes | Parse a vector of phenotype names |
| parse_tissue_description | Parse the description tag of the tissue map image read from... |
| phenoptr-package | Helpers for working with inForm data |
| plot_diverging | Plot a distance map using a diverging color scale with white... |
| read_cell_seg_data | Read and clean an inForm data file. |
| read_components | Read a component TIFF file. |
| read_maps | Read an inForm segmentation map file. |
| sample_cell_seg_data | Sample cell segmentation data. |
| select_rows | Flexibly select rows of a data frame. |
| spatial_distribution_report | Create a spatial distribution report. |
| split_and_trim | Split a single string and trim whitespace from the results |
| subset_distance_matrix | Subset the rows and columns of a distance matrix. |
