phenoptr-package: Helpers for working with inForm data
In PerkinElmer/phenoptr: inForm Helper Functions
Description
Details
Package options
Author(s)
See Also
Description
phenoptr contains functions that make it easier to read and analyze data
tables and images created by PerkinElmer's inForm software.
Details
phenoptr is part of the PerkinElmer Phenoptics family of
Quantitative Pathology Research Solutions. For more information visit the
Phenoptics home page.
Package options
read_cell_seg_data converts pixel measurements to microns. Several other
functions also implicitly convert pixels to microns. The default conversion
is given by getOption('phenoptr.pixels.per.micron'), which has a default
value of 2 pixels/micron, i.e. pixels are 0.5 micron square
(the resolution of 20x MSI fields taken on Vectra Polaris and Vectra 3).
To use a
different value, either pass a pixels_per_micron parameter to functions
which take one, or set options(phenoptr.pixels.per.micron=<new value>).
Author(s)
Maintainer: Kent S Johnson kent.johnson@perkinelmer.com
Other contributors:
PerkinElmer, Inc. [copyright holder]
See Also
Useful links:
-
Report bugs at https://github.com/PerkinElmer/phenoptr/issues
PerkinElmer/phenoptr documentation built on May 30, 2019, 8:01 a.m.
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Description Details Package options Author(s) See Also
Description
phenoptr contains functions that make it easier to read and analyze data tables and images created by PerkinElmer's inForm software.
Details
phenoptr is part of the PerkinElmer Phenoptics family of Quantitative Pathology Research Solutions. For more information visit the Phenoptics home page.
Package options
read_cell_seg_data converts pixel measurements to microns. Several other
functions also implicitly convert pixels to microns. The default conversion
is given by getOption('phenoptr.pixels.per.micron'), which has a default
value of 2 pixels/micron, i.e. pixels are 0.5 micron square
(the resolution of 20x MSI fields taken on Vectra Polaris and Vectra 3).
To use a
different value, either pass a pixels_per_micron parameter to functions
which take one, or set options(phenoptr.pixels.per.micron=<new value>).
Author(s)
Maintainer: Kent S Johnson kent.johnson@perkinelmer.com
Other contributors:
PerkinElmer, Inc. [copyright holder]
See Also
Useful links:
Report bugs at https://github.com/PerkinElmer/phenoptr/issues
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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