read_components: Read a component TIFF file.
In PerkinElmer/phenoptr: inForm Helper Functions
Description
Usage
Arguments
Details
Value
See Also
Examples
View source: R/read_components.R
Description
Read an inForm component_data.tif file.
If the file contains multiple resolutions or other data,
keep only the full-resolution component images,
extract the component names from the image descriptions,
and return a named list of image matrices.
Usage
1
read_components(path)
Arguments
path
Path to the component_data.tif file.
Details
Images are oriented to match the coordinates in a cell seg data file,
i.e. (0, 0) at the top left and the row corresponding to Y and
column corresponding to X.
Limited to 1x1 fields due to
limitations in the tiff package. Install the PerkinElmer
fork of the tiff package to
remove this limitation.
Value
A named list of matrices, one for each component.
See Also
Other file readers: get_field_info,
list_cell_seg_files,
read_cell_seg_data, read_maps
Examples
1
2
3
4
5
## Not run:
path <- "/path/to/my_component_data.tif"
components <- read_components(path)
## End(Not run)
PerkinElmer/phenoptr documentation built on May 30, 2019, 8:01 a.m.
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Description Usage Arguments Details Value See Also Examples
View source: R/read_components.R
Description
Read an inForm component_data.tif file.
If the file contains multiple resolutions or other data,
keep only the full-resolution component images,
extract the component names from the image descriptions,
and return a named list of image matrices.
Usage
1 | read_components(path)
|
Arguments
path |
Path to the |
Details
Images are oriented to match the coordinates in a cell seg data file, i.e. (0, 0) at the top left and the row corresponding to Y and column corresponding to X.
Limited to 1x1 fields due to
limitations in the tiff package. Install the PerkinElmer
fork of the tiff package to
remove this limitation.
Value
A named list of matrices, one for each component.
See Also
Other file readers: get_field_info,
list_cell_seg_files,
read_cell_seg_data, read_maps
Examples
1 2 3 4 5 | ## Not run:
path <- "/path/to/my_component_data.tif"
components <- read_components(path)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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