colAnyNAs: Check if any elements in a row (column) of a matrix-like...

In PeteHaitch/DelayedMatrixStats: Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Check if any elements in a row (column) of a matrix-like object is missing

Description

Check if any elements in a row (column) of a matrix-like object is missing.

Usage

## S4 method for signature 'DelayedMatrix'
colAnyNAs(
  x,
  rows = NULL,
  cols = NULL,
  force_block_processing = FALSE,
  ...,
  useNames = TRUE
)

## S4 method for signature 'DelayedMatrix'
rowAnyNAs(
  x,
  rows = NULL,
  cols = NULL,
  force_block_processing = FALSE,
  ...,
  useNames = TRUE
)

Arguments

x	A NxK DelayedMatrix.
rows, cols	A vector indicating the subset of rows (and/or columns) to operate over. If NULL, no subsetting is done.
force_block_processing	FALSE (the default) means that a seed-aware, optimised method is used (if available). This can be overridden to use the general block-processing strategy by setting this to TRUE (typically not advised). The block-processing strategy loads one or more (depending on ⁠\link[DelayedArray]{getAutoBlockSize}()⁠) columns (colFoo()) or rows (rowFoo()) into memory as an ordinary base::array.
...	Additional arguments passed to specific methods.
useNames	If TRUE (default), names attributes of result are set. Else if FALSE, no naming support is done.

Details

The S4 methods for x of type matrix, array, table, or numeric call matrixStats::rowAnyNAs / matrixStats::colAnyNAs.

Value

Returns a logical vector of length N (K).

Author(s)

Peter Hickey

See Also

• matrixStats::rowAnyNAs() and matrixStats::colAnyNAs() which are used when the input is a matrix or numeric vector.

• For checks if any element is equal to a value, see rowAnys().

• base::is.na() and base::any().

Examples

# A DelayedMatrix with a 'matrix' seed
dm_matrix <- DelayedArray(matrix(c(rep(1L, 5),
                                   as.integer((0:4) ^ 2),
                                   seq(-5L, -1L, 1L)),
                                 ncol = 3))
# A DelayedMatrix with a 'HDF5ArraySeed' seed
# NOTE: Requires that the HDF5Array package is installed
library(HDF5Array)
dm_HDF5 <- writeHDF5Array(matrix(c(rep(1L, 5),
                                   as.integer((0:4) ^ 2),
                                   seq(-5L, -1L, 1L)),
                                 ncol = 3))

dm_matrix[dm_matrix > 3] <- NA
colAnyNAs(dm_matrix)
dm_HDF5[dm_HDF5 > 3] <- NA
rowAnyNAs(dm_HDF5)

PeteHaitch/DelayedMatrixStats documentation built on May 6, 2024, 10:25 p.m.