colCounts: Count how often an element in a row (column) of a matrix-like...

In PeteHaitch/DelayedMatrixStats: Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Count how often an element in a row (column) of a matrix-like object is equal to a value

Description

Count how often an element in a row (column) of a matrix-like object is equal to a value.

Usage

## S4 method for signature 'DelayedMatrix'
colCounts(
  x,
  rows = NULL,
  cols = NULL,
  value = TRUE,
  na.rm = FALSE,
  force_block_processing = FALSE,
  ...,
  useNames = TRUE
)

## S4 method for signature 'DelayedMatrix'
rowCounts(
  x,
  rows = NULL,
  cols = NULL,
  value = TRUE,
  na.rm = FALSE,
  force_block_processing = FALSE,
  ...,
  useNames = TRUE
)

Arguments

x	A NxK DelayedMatrix.
rows, cols	A vector indicating the subset of rows (and/or columns) to operate over. If NULL, no subsetting is done.
value	The value to search for.
na.rm	If TRUE, missing values (NA or NaN) are omitted from the calculations.
force_block_processing	FALSE (the default) means that a seed-aware, optimised method is used (if available). This can be overridden to use the general block-processing strategy by setting this to TRUE (typically not advised). The block-processing strategy loads one or more (depending on ⁠\link[DelayedArray]{getAutoBlockSize}()⁠) columns (colFoo()) or rows (rowFoo()) into memory as an ordinary base::array.
...	Additional arguments passed to specific methods.
useNames	If TRUE (default), names attributes of result are set. Else if FALSE, no naming support is done.

Details

The S4 methods for x of type matrix, array, table, or numeric call matrixStats::rowCounts / matrixStats::colCounts.

Value

Returns a integer vector of length N (K).

Author(s)

Peter Hickey

See Also

• matrixStats::rowCounts() and matrixStats::colCounts() which are used when the input is a matrix or numeric vector.

• For checks if any element is equal to a value, see rowAnys(). To check if all elements are equal, see rowAlls().

Examples

# A DelayedMatrix with a 'matrix' seed
dm_matrix <- DelayedArray(matrix(c(rep(1L, 5),
                                   as.integer((0:4) ^ 2),
                                   seq(-5L, -1L, 1L)),
                                 ncol = 3))
# A DelayedMatrix with a 'DataFrame' seed
dm_DF <- DelayedArray(S4Vectors::DataFrame(C1 = rep(1L, 5),
                                           C2 = as.integer((0:4) ^ 2),
                                           C3 = seq(-5L, -1L, 1L)))

colCounts(dm_matrix, value = 1)
# Only count those in the first 4 rows
colCounts(dm_matrix, rows = 1:4, value = 1)

rowCounts(dm_DF, value = 5)
# Only count those in the odd-numbered rows of the 2nd column
rowCounts(dm_DF, rows = seq(1, nrow(dm_DF), 2), cols = 2, value = 5)

PeteHaitch/DelayedMatrixStats documentation built on Nov. 9, 2024, 10:53 a.m.