Files in PeteHaitch/MethylationTuples
Tools for analysing methylation patterns at genomic tuples
.Rbuildignore
.coveralls.R
.gitignore
.travis.yml
DESCRIPTION
MethylationTuples.Rproj
NAMESPACE
R/AllGenerics.R
R/AllUtilities.R
R/MBias.R
R/MTuples-class.R
R/MTuplesList-class.R
R/MethInfo-class.R
R/MethPat-class.R
R/MethylationTuples.R
R/RcppExports.R
R/collapseStrand.R
R/cometh.R
R/filterOutVariants.R
R/findMTuples.R
R/mantelhaen.R
R/methLevelCor.R
R/patternFreqs.R
R/readMethtuple.R
R/tmpFixes.R
R/zzz.R
README.md
TODO.Rmd
inst/NEWS.rd
inst/extdata/SRR949193_20k.rmdup.CG.1.tsv.gz
inst/extdata/SRR949193_20k.rmdup.CG.3.tsv.gz
man/MBias-class.Rd
man/MTuples-class.Rd
man/MTuplesList-class.Rd
man/MethInfo-class.Rd
man/MethPat-class.Rd
man/MethylationTuples-package.Rd
man/collapseStrand.Rd
man/cometh.Rd
man/filter-MBias-method.Rd
man/filterOutVariants.Rd
man/findMTuples.Rd
man/getCoverage-MethPat-method.Rd
man/methLevel-MethPat-method.Rd
man/methLevelCor.Rd
man/methinfo-set.Rd
man/patternFreqs.Rd
man/readMBias.Rd
man/readMethtuple.Rd
notes_on_bissnp.Rmd
src/MethylationTuples_init.c
src/RcppExports.cpp
src/makeAdjacentPairs.cpp
src/makeAllPairs.cpp
src/sortMatrix.cpp
tests/testthat.R
tests/testthat/fake_data/bad_fake_1.tsv
tests/testthat/fake_data/bad_fake_3.tsv
tests/testthat/fake_data/good_fake_1.tsv
tests/testthat/fake_data/good_fake_3.tsv
tests/testthat/helper-make-test-data.R
tests/testthat/test-AllUtilities.R
tests/testthat/test-MTuples-class.R
tests/testthat/test-MTuplesList-class.R
tests/testthat/test-MethInfo-class.R
tests/testthat/test-MethPat-class.R
tests/testthat/test-findOverlaps-methods.R
tests/testthat/test-makeAdjacentPairsCpp.R
tests/testthat/test-makeAllPairsCpp.R
tests/testthat/test-methLevelCor.R
tests/testthat/test-readMethtuple.R
tmp/tmp.cpp
tmp/tmp_demo.R
