findMTuples: Find tuples of methylation loci of a given size in a...

In PeteHaitch/MethylationTuples: Tools for analysing methylation patterns at genomic tuples

Description

Find tuples of methylation loci of a given size in a reference genome.

Usage

findMTuples(bsgenome, methinfo, size, exclude = NULL)

Arguments

bsgenome	A BSgenome object for the reference genome of interest.
methinfo	A MethInfo object containing the type of methylation loci for which to search.
size	An integer specifying the size of tuples for which to search.
exclude	A character vector of seqnames to be filtered out from the bsgenome.

Value

An MTuples object containing the tuples.

Examples

## Not run: 
# Find all 2-tuples of CG in the C. elegans reference genome
library(BSgenome.Celegans.UCSC.ce2)
findMTuples(bsgenome = Celegans, methinfo = MethInfo('CG'), size = 2)

## End(Not run)

PeteHaitch/MethylationTuples documentation built on May 8, 2019, 1:30 a.m.