Files in PeteHaitch/MethylationTuples

Tools for analysing methylation patterns at genomic tuples

.Rbuildignore

.coveralls.R

.gitignore

.travis.yml

DESCRIPTION

MethylationTuples.Rproj

NAMESPACE

R/AllGenerics.R R/AllUtilities.R R/MBias.R R/MTuples-class.R R/MTuplesList-class.R R/MethInfo-class.R R/MethPat-class.R R/MethylationTuples.R R/RcppExports.R R/collapseStrand.R R/cometh.R R/filterOutVariants.R R/findMTuples.R R/mantelhaen.R R/methLevelCor.R R/patternFreqs.R R/readMethtuple.R R/tmpFixes.R R/zzz.R README.md TODO.Rmd

inst/NEWS.rd

inst/extdata/SRR949193_20k.rmdup.CG.1.tsv.gz

inst/extdata/SRR949193_20k.rmdup.CG.3.tsv.gz

man/MBias-class.Rd man/MTuples-class.Rd man/MTuplesList-class.Rd man/MethInfo-class.Rd man/MethPat-class.Rd man/MethylationTuples-package.Rd man/collapseStrand.Rd man/cometh.Rd man/filter-MBias-method.Rd man/filterOutVariants.Rd man/findMTuples.Rd man/getCoverage-MethPat-method.Rd man/methLevel-MethPat-method.Rd man/methLevelCor.Rd man/methinfo-set.Rd man/patternFreqs.Rd man/readMBias.Rd man/readMethtuple.Rd notes_on_bissnp.Rmd

src/MethylationTuples_init.c

src/RcppExports.cpp

src/makeAdjacentPairs.cpp

src/makeAllPairs.cpp

src/sortMatrix.cpp

tests/testthat.R

tests/testthat/fake_data/bad_fake_1.tsv

tests/testthat/fake_data/bad_fake_3.tsv

tests/testthat/fake_data/good_fake_1.tsv

tests/testthat/fake_data/good_fake_3.tsv

tests/testthat/helper-make-test-data.R tests/testthat/test-AllUtilities.R tests/testthat/test-MTuples-class.R tests/testthat/test-MTuplesList-class.R tests/testthat/test-MethInfo-class.R tests/testthat/test-MethPat-class.R tests/testthat/test-findOverlaps-methods.R tests/testthat/test-makeAdjacentPairsCpp.R tests/testthat/test-makeAllPairsCpp.R tests/testthat/test-methLevelCor.R tests/testthat/test-readMethtuple.R

tmp/tmp.cpp

tmp/tmp_demo.R

PeteHaitch/MethylationTuples documentation built on May 8, 2019, 1:30 a.m.