MACSQuant: The MACSQuant Class

In Peyronlab/MACSQuantifyR: Fast treatment of MACSQuantify FACS data

Description

MACSQuant object contains all the data and the user parameters

Slots

my_data

Contains the raw data

my_data_sorted

Contains the sorted data (according to replicates order)

my_replicates_sorted

Contains the sorted matrix containing replicates names

experiment_name

Contains the experiment name given by the user

statistics

Contains the statistics for each condition

combination.index.df

data.frame that contains the outputs of the combination_index function

param.experiment

list that contains the parameters relative to the experiment (i.e, number of replicates, number of conditions...)

param.output

List that contains the parameters relative to the report generation and outputs (i.e, save intermediary results, generate full report..)

Peyronlab/MACSQuantifyR documentation built on April 4, 2020, 11:24 a.m.