on_plate_selection: Sort experimental design on graphical 96-well-plate

In Peyronlab/MACSQuantifyR: Fast treatment of MACSQuantify FACS data

Description

Loads user's data, prompt a graphical representation of a 96 well plate and let the user select where the duplicates of each condition were placed. Use for reordering excel file. Plate image with selection can also be saved in the form of a png file in the "specified_path/output_MQ" directory.

Usage

on_plate_selection(MACSQuant,number_of_replicates,number_of_conditions,
control=FALSE,save.files=FALSE)

Arguments

MACSQuant	object of class MACSQuant resulting of the function load_maxQuant(). Contains the original data table
number_of_replicates	For each condition, the number of duplicates (must be the same for all conditions)
number_of_conditions	The number of conditions tested (eg: Drug 1 alone, Drug 2 alone)
control	Is there a control in this experiment (eg: Staurosporin)
save.files	Used to save the image in the output folder

Value

A formatted report file along with intermediates results

Examples

print("run manually, requires user input")
# on_plate_selection(MACSQuant,3,5)
# let you select 5 conditions of 3 replicates each

Peyronlab/MACSQuantifyR documentation built on April 4, 2020, 11:24 a.m.