API for PhanstielLab/plotgardener
Coordinate-Based Genomic Visualization Package for R
| Global functions | |
|---|---|
| .onLoad | Source code |
| addViewport | Source code |
| adjust_resolution | Source code |
| adjust_vpCoords | Source code |
| annoDomains | Man page Source code |
| annoGenomeLabel | Man page Source code |
| annoHeatmapLegend | Man page Source code |
| annoHighlight | Man page Source code |
| annoPixels | Man page Source code |
| annoSegments | Man page Source code |
| annoText | Man page Source code |
| annoXaxis | Man page Source code |
| annoYaxis | Man page Source code |
| annoZoomLines | Man page Source code |
| assembly | Man page Source code |
| assignRows | Source code |
| c | Man page |
| calcSignalRange | Man page Source code |
| checkAssemblyMatch | Source code |
| checkColorby | Source code |
| checkRow | Source code |
| check_page | Source code |
| check_placement | Source code |
| chromDataAgreement | Source code |
| colorDefaults | Source code |
| colorby | Man page Source code |
| convertManhattan | Source code |
| convert_gpath | Source code |
| convert_page | Source code |
| current_viewports | Source code |
| cutoffLabel | Source code |
| defaultGenePriorities | Source code |
| defaultPackages | Man page Source code |
| defaultUnits | Source code |
| geneData | Source code |
| genomes | Man page Source code |
| genomicScale | Source code |
| getAnnoViewport | Source code |
| getExons | Source code |
| hicErrors | Source code |
| hic_limit | Source code |
| inherit_half | Source code |
| justConversion | Source code |
| lineColors | Source code |
| makeTransparent | Source code |
| mapColors | Man page Source code |
| misc_defaultUnits | Source code |
| pageCreate | Man page Source code |
| pageGuideHide | Man page Source code |
| pageGuideHorizontal | Man page Source code |
| pageGuideShow | Man page Source code |
| pageGuideVertical | Man page Source code |
| pageLayoutCol | Man page |
| pageLayoutRow | Man page Source code |
| pagePlotPlace | Man page Source code |
| pagePlotRemove | Man page Source code |
| parseAssembly | Source code |
| parseColors | Source code |
| parseParams | Source code |
| pgParams | Man page Source code |
| plotBase | Source code |
| plotChromGenomeLabel | Source code |
| plotCircle | Man page Source code |
| plotGG | Man page Source code |
| plotGenes | Man page Source code |
| plotGenomeLabel | Man page Source code |
| plotHicRectangle | Man page Source code |
| plotHicSquare | Man page Source code |
| plotHicTriangle | Man page Source code |
| plotIdeogram | Man page Source code |
| plotLegend | Man page Source code |
| plotManhattan | Man page Source code |
| plotManhattanGenomeLabel | Source code |
| plotMultiSignal | Man page Source code |
| plotPairs | Man page Source code |
| plotPairsArches | Man page Source code |
| plotPolygon | Man page Source code |
| plotRanges | Man page Source code |
| plotRaster | Man page Source code |
| plotRect | Man page Source code |
| plotSegments | Man page Source code |
| plotSignal | Man page Source code |
| plotText | Man page Source code |
| plotTranscripts | Man page Source code |
| plot_belowY | Source code |
| plotgardener | Man page |
| plotgardener-package | Man page |
| rangeErrors | Source code |
| readBigwig | Man page Source code |
| readHic | Man page Source code |
| read_data | Source code |
| read_pairedData | Source code |
| read_rangeData | Source code |
| rebinBigwig | Source code |
| regionErrors | Source code |
| setGP | Source code |
| set_zrange | Source code |
| spaceChroms | Source code |
| viewport_name | Source code |
| vp_bottomLeft | Source code |
| vp_bottomRight | Source code |
| vp_topLeft | Source code |
| vp_topRight | Source code |
