GM12878_ChIP_H3K27ac_signal: plotgardener example GM12878 H3K27ac ChIP signal data

In PhanstielLab/plotgardenerData: Datasets and test data files for the plotgardener package

plotgardener example GM12878 H3K27ac ChIP signal data

Description

A dataset listing read depths across the genome resulting from H3K27ac ChIP-seq in the GM12878 cell line. Genomic coordinates fall within the region chr21:28000000-30300000 according to the hg19 genome build.

Usage

data("GM12878_ChIP_H3K27ac_signal")

Format

a dataframe in BED format with a "score" column

chrom

The name of the chromosome on which the genome feature exists.

start

The starting position of the feature in the chromosome.

end

The ending position of the feature in the chromosome.

score

Score value of read depth.

Source

Data with reference epigenome identifier E116 was downloaded from the NIH Roadmap Epigenomics Project http://www.roadmapepigenomics.org/.

References

Roadmap Epigenomics Consortium., Integrative analysis coordination., Kundaje, A. et al. Integrative analysis of 111 reference human epigenomes. Nature 518, 317–330 (2015). https://doi.org/10.1038/nature14248

PhanstielLab/plotgardenerData documentation built on Nov. 8, 2022, 11:20 a.m.