GM12878_HiC_10kb: plotgardener example GM12878 Hi-C data at 10 Kb resolution
In PhanstielLab/plotgardenerData: Datasets and test data files for the plotgardener package
GM12878_HiC_10kb R Documentation
plotgardener example GM12878 Hi-C data at 10 Kb resolution
Description
A dataset containing interaction frequency matrix
counts along genomic coordinates in the
region chr21:28000000-30300000 according to the hg19
genome build. This data is from the GM12878
cell line.
Usage
data("GM12878_HiC_10kb")
Format
a 3-column data frame in sparse upper triangular format.
References
Rao SS, Huntley MH, Durand NC, Stamenova EK,
Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES,
Aiden EL. A 3D map of the human genome at kilobase resolution reveals
principles of chromatin looping. Cell.
2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021.
Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8.
PMID: 25497547; PMCID: PMC5635824.
(PubMed)
PhanstielLab/plotgardenerData documentation built on Nov. 8, 2022, 11:20 a.m.
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| GM12878_HiC_10kb | R Documentation |
plotgardener example GM12878 Hi-C data at 10 Kb resolution
Description
A dataset containing interaction frequency matrix counts along genomic coordinates in the region chr21:28000000-30300000 according to the hg19 genome build. This data is from the GM12878 cell line.
Usage
data("GM12878_HiC_10kb")
Format
a 3-column data frame in sparse upper triangular format.
References
Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824. (PubMed)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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