IMR90_HiC_10kb: plotgardener example IMR90 Hi-C data at 10 Kb resolution

IMR90_HiC_10kbR Documentation

plotgardener example IMR90 Hi-C data at 10 Kb resolution

Description

A dataset containing interaction frequency matrix counts along genomic coordinates in the region chr21:28000000-30300000 according to the hg19 genome build. This data is from the IMR90 cell line.

Usage

data("IMR90_HiC_10kb")

Format

a 3-column data frame in sparse upper triangular format.

References

Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824. (PubMed)


PhanstielLab/plotgardenerData documentation built on June 15, 2024, 10:38 p.m.