Man pages for PheWAS/PheWAS
Phenome Wide Association Studies (PheWAS)
| addPhecodeInfo | Add phecode descriptions and group information to existing... |
| createPhenotypes | Creates a phenotype table from id, ICD9CM, ICD10CM (or... |
| createPhewasTable | Creates a phenotype table from id, ICD-9 (or phecode, etc),... |
| generateExample | Generate example data for PheWAS |
| mapCodesToPhecodes | Map codes to phecodes |
| mapICD9ToPhecodes | Map ICD9 codes to phecodes |
| mapPhecodesToExclusions | Map phecodes to their exclusions |
| phecode_exclude | Dataframe containing phewas code mappings to their exclusions |
| phecode_map | Dataframe containing phecode mappings for ICD9CM and ICD10CM. |
| phecode_map_icd10 | Dataframe containing phecode mappings for ICD10. |
| phecode_rollup_map | Dataframe containing phecode rollup mappings. |
| pheinfo | Data frame containing phecode information. |
| phemap | Dataframe containing phecode mappings. |
| phewas | Function to perform a PheWAS analysis |
| PheWAS-defunct | Defunct methods in the PheWAS package |
| phewasDT | Wrapper to create a browsable datatable |
| phewas_ext | Function to perform a PheWAS analysis with multiple methods |
| phewasMeta | Perform meta-analysis of PheWAS results |
| phewasMetaModels | Perform meta-analysis of PheWAS results |
| phewas-package | PheWAS analysis methods |
| PheWAS_Plotting | Plotting methods for PheWAS results, phenotype association... |
| plinkPhewasExport | Export a table for PheWAS analysis in plink |
| restrictPhecodesBySex | Restrict individuals for sex-specific phecodes |
| sex_restriction | Data frame containing potential sex-restricted phecodes. |
