restrictPhecodesBySex: Restrict individuals for sex-specific phecodes
In PheWAS/PheWAS: Phenome Wide Association Studies (PheWAS)
View source: R/restrictPhecodesBySex.R
restrictPhecodesBySex R Documentation
Restrict individuals for sex-specific phecodes
Description
restrictPhecodesBySex alters a table for PheWAS with phecodes, as from createPhenotypes, to exclude individuals with non-applicable sexes from certain phenotypes.
Usage
restrictPhecodesBySex(phenotypes,id.sex,sex.restriction=PheWAS::sex_restriction)
Arguments
phenotypes
The PheWAS table to have restrictions applied. The first column should be the id.
id.sex
A data frame with the first column being the id and the second the sex, "M" or "F", of the individual. Individuals with any other specification will have all sex-specific phenotypes set to NA.
sex.restriction
List that specifies sex-specific phecodes. By default uses the provided PheWAS::sex_restriction.
Value
The phenotypes data frame with NA values for individuals that do not match the sex for sex-specific codes.
PheWAS/PheWAS documentation built on July 3, 2023, 3:40 p.m.
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View source: R/restrictPhecodesBySex.R
| restrictPhecodesBySex | R Documentation |
Restrict individuals for sex-specific phecodes
Description
restrictPhecodesBySex alters a table for PheWAS with phecodes, as from createPhenotypes, to exclude individuals with non-applicable sexes from certain phenotypes.
Usage
restrictPhecodesBySex(phenotypes,id.sex,sex.restriction=PheWAS::sex_restriction)
Arguments
phenotypes |
The PheWAS table to have restrictions applied. The first column should be the id. |
id.sex |
A data frame with the first column being the id and the second the sex, "M" or "F", of the individual. Individuals with any other specification will have all sex-specific phenotypes set to NA. |
sex.restriction |
List that specifies sex-specific phecodes. By default uses the provided PheWAS::sex_restriction. |
Value
The phenotypes data frame with NA values for individuals that do not match the sex for sex-specific codes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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