In PietaSchofield/pietalib: A Small Collection Of Useful Functions

Pietalib my private R functions

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require(pietalib)
localDir <- "/Users/pschofield/"
fileName <- "index"
projName <- "pietalib"
projDir <- paste0("/homes/pschofield/Projects/",projName,"/")
urlStub <- paste0("/PietaSchofield/",projName,"/")
if(FALSE){
  knit(input=paste0(localDir,"git_hub/",projName,"/wiki/",fileName,".Rmd"),
       output=paste0(localDir,"git_hub/",projName,".wiki/Home.md"))

  buildAll(projName,fileName,outdir=paste0(projDir,"web"),
           indir=paste0(localDir,"git_hub/",projName,"/wiki/"),explicit=T)
}

Introduction

This page attempts to document the creation of my pietalib personal package of function. I am attempting to do this outside RStudio using the devtools package from the command line, and Hadley Wickham's Book as a reference

# change to the development directory
setwd("/Users/pschofield/git_hub/pietalib")
# create a test directory
devtools::use_testthat()
# create the documentation from the roxygen comments in the R sources
devtools::document()
# load the package for testing
devtools::load_all()
# run the test scripts stored in the tests subdirectory
devtools::test()
# install the packages so it can be used outwith the source directory
devtools::install(reload=T)
# get the help for one of the functions
help(subScript)
devtools::use_data_raw()
devtools::use_vignette("pietalib")

January 20, 2015

Moved the code base to a GitHub repository like the SpikeNorm one

January 23, 2015

Some ammendments - Started adding timelogging stuff for quick loading of OfficeTime data - Added cores to subScript - Added a function rsh to run remote command - Added a function to save a list of package citations to a bib file for importing into endnote

February 19, 2015

Fix the prism parser

filename <- "/Users/pschofield/Projects/sumo_rth/data/qPCRresults/Figure_S10JK/CHD4.pzfx"
dat <- readPrism(filename)
kable(dat)

March 25, 2015

Edited the timesheet management functions to have a from and to date.

Added a function to pull some grid engine info from the cluster.

PietaSchofield/pietalib documentation built on May 8, 2019, 3:18 a.m.