Description Usage Format Value Author(s) Source
finalMSP
is of instance MSP
, a container for
MS/MS data. finalMSP
is derived from the object tissue
and compartmentTissue
.
1 |
object of class MSP
object of class MSP
Thomas Naake, thomasnaake@googlemail.com
data("idMSMStissueproject", package = "MetCirc") ## create vectors with precursor names present in tissue tissueSPL <- compartmentTissue[compartmentTissue[,"SPL"] == TRUE, 1] tissueLIM <- compartmentTissue[compartmentTissue[,"LIM"] == TRUE, 1] tissueANT <- compartmentTissue[compartmentTissue[,"ANT"] == TRUE, 1] tissueSTY <- compartmentTissue[compartmentTissue[,"STY"] == TRUE, 1]
## truncate tissue tissueSPL <- tissue[tissue[,4] tissueLIM <- tissue[tissue[,4] tissueANT <- tissue[tissue[,4] tissueSTY <- tissue[tissue[,4]
## create msp and combine msp objects of different tissues finalMSP <- convert2MSP(tissueSPL, rt = TRUE) finalMSP <- combine(finalMSP, convert2MSP(tissueLIM), rt = TRUE) finalMSP <- combine(finalMSP, convert2MSP(tissueANT), rt = TRUE) finalMSP <- combine(finalMSP, convert2MSP(tissueSTY), rt = TRUE)
## write finalMSP to idMSMStoMSP.RData save(finalMSP, file = "idMSMStoMSP.RData", compress = "xz")
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