addClusteringManually | addClusteringManually |
calculateClustersSimilarity | Having cells similarity, calculate clusters similarity. |
choosePalette | Choose palette for a plot. |
clusterCellsInternal | Cluster cells and get similarity matrix of cells. |
exportClusteringResults | exportClusteringResults |
exportMatrix | Export matrix to a file. |
generateTSNECoordinates | Generate and save t-SNE coordinates with selected parameters. |
getGenesInfo | Collect genes information to one table. |
getMarkerGenes | Get top N marker genes from each cluster. |
initialisePath | Create all needed directories for CONCLUS output. |
normaliseCountMatrix | normaliseCountMatrix |
plotCellHeatmap | Save markers heatmap. |
plotCellSimilarity | Save a cells similarity matrix. |
plotClusteredTSNE | Plot t-SNE. Addtionally, it can highlight clusters or states. |
plotClustersSimilarity | Save a similarity cluster matrix. |
plotGeneExpression | plotGeneExpression |
rankGenes | Rank marker genes by statistical significance. |
runClustering | DBSCAN clustering on t-SNE results. |
runCONCLUS | Run CONCLUS in one click |
runDBSCAN | Run clustering iterations with selected parameters using... |
saveGenesInfo | Save gene information into a table or tables for multiple... |
saveMarkersLists | Save top N marker genes for each cluster into a format... |
testClustering | To check one iteration of clustering before running full... |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.