calculateClustersSimilarity: Having cells similarity, calculate clusters similarity.
In PolinaPavlovich/CONCLUS: ScRNA-seq workflow CONCLUS - from CONsensus CLUSters to a meaningful CONCLUSion.
Description
Usage
Arguments
Value
Description
Having cells similarity, calculate clusters similarity.
Usage
1
2
calculateClustersSimilarity(cellsSimilarityMatrix, sceObject,
clusteringMethod)
Arguments
cellsSimilarityMatrix
a similarity matrix, one of the results of conclus::clusterCellsInternal() function.
sceObject
a SingleCellExperiment object with your experiment.
clusteringMethod
a clustering methods passed to hclust() function.
Value
A list contating the cluster similarity matrix and cluster names (order).
PolinaPavlovich/CONCLUS documentation built on May 10, 2019, 2:42 p.m.
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Description Usage Arguments Value
Description
Having cells similarity, calculate clusters similarity.
Usage
1 2 | calculateClustersSimilarity(cellsSimilarityMatrix, sceObject,
clusteringMethod)
|
Arguments
cellsSimilarityMatrix |
a similarity matrix, one of the results of conclus::clusterCellsInternal() function. |
sceObject |
a SingleCellExperiment object with your experiment. |
clusteringMethod |
a clustering methods passed to hclust() function. |
Value
A list contating the cluster similarity matrix and cluster names (order).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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