calc_Diversity: calc_Diversity generic
In PoonLab/highlineR: A Novel Visualization Tool to Assess Diversity in NGS Data
Description
Usage
Arguments
Value
Description
Calculates four sequence-based diversity measures in NGS Data objects.
Usage
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calc_Diversity(x)
## S3 method for class 'session'
calc_Diversity(x)
## S3 method for class 'Data'
calc_Diversity(x)
Shannon_Entropy(x)
Percent_Complexity(x)
Nucleotide_Diversity(x)
Percent_Diversity(x)
Arguments
x
Data object or session object containing Data objects to calculate diversity in.
Value
Returns dataframe of calculated sequence-based diversity measures.
PoonLab/highlineR documentation built on Aug. 2, 2019, 4:32 p.m.
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Description Usage Arguments Value
Description
Calculates four sequence-based diversity measures in NGS Data objects.
Usage
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | calc_Diversity(x)
## S3 method for class 'session'
calc_Diversity(x)
## S3 method for class 'Data'
calc_Diversity(x)
Shannon_Entropy(x)
Percent_Complexity(x)
Nucleotide_Diversity(x)
Percent_Diversity(x)
|
Arguments
x |
Data object or session object containing Data objects to calculate diversity in. |
Value
Returns dataframe of calculated sequence-based diversity measures.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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