import_raw_seq: Import NGS file(s).

In PoonLab/highlineR: A Novel Visualization Tool to Assess Diversity in NGS Data

Description

import_raw_seq creates Data object(s) for NGS file(s).

Usage

import_raw_seq(path, datatype, seqtype, session = "highlineR.session",
  force = FALSE)

Arguments

path	A character string representing an absolute path to an NGS file, an absolute path to a directory of NGS files or a character vector of absolute paths to NGS files.
datatype	A character string representing the file type. Value is inferred from file extension or specified by user as "fasta" or "fastq.
seqtype	A character string representing the sequence type. Options: "nucleotide" (default) or "amino acid".
session	session object or character string name of session object into which NGS data should be imported. Default is "highlineR.session".
force	A logical value specifying if previously imported file should be overwritten and re-imported.

Value

Returns session object into which NGS data file(s) were imported.

PoonLab/highlineR documentation built on Aug. 2, 2019, 4:32 p.m.