Man pages for PratheepaJ/diffTop
Differential topic analysis using latent Dirichlet allocation
| alignmentMatrix | aligned topics across chains |
| betaAligned | Align ASVs proportions in topics across chain. |
| dds_all_K_11 | "DESeqDataSet" object for the differential topic analysis on... |
| dds_all_paired_aster_K_11 | "DESeqDataSet" object for the differential topic analysis on... |
| dds_all_paired_K_11 | "DESeqDataSet" object for the differential topic analysis on... |
| dds_all_paired_nonaster_K_11 | "DESeqDataSet" object for the differential topic analysis on... |
| diagnosticsPlot | Diagnostics plots - ESS and Rhat. |
| diffTopAnalysis | Differential topic analysis |
| diffTop-package | The 'diffTop' package. |
| LDAtopicmodel | Bayesian latent Dirichlet allocation for 16S and metagenomics... |
| modelAssessment | Model assessment for LDA based on the maximum abundance for... |
| phyloseqTransformation | Anscombe (1948) transformation |
| plotASVCircular | Plot the ASVs distribution in each topic. |
| plotTopicProportion | Plot the topic distribution in all specimens. |
| powerstand | A vector |
| powerswitch | A vector |
| ps_ans | "phyloseq" object for the Anscombe transformed data published... |
| psE | "phyloseq" object for the data published in Fitzpatrick et... |
| psE_BARBI | "phyloseq" object for the data published in Fitzpatrick et... |
| setUpData | Set-up data for latent Dirichlet allocation |
| thetaAligned | Align topic proportions in specimens across chain. |
| writeResTable | Write differential topic analysis results to latex |
