plotASVCircular: Plot the ASVs distribution in each topic.

In PratheepaJ/diffTop: Differential topic analysis using latent Dirichlet allocation

Description

Plot the ASVs distribution in each topic.

Usage

plotASVCircular(
  ps,
  K,
  beta_aligned,
  varnames = c("iterations", "topic", "rsv_ix"),
  value_name = "beta_h",
  taxonomylevel = "Class",
  thresholdASVprop = 0.008
)

Arguments

ps	phyloseq object.
K	integer. number of topics.
beta_aligned	List. returned object of betaAligned().
varnames	Character vector. Use to name column of long formatted data frame of ASVs distribution. An example is c("iterations", "topic", "rsv_ix")
value_name	Character. Use to name the summary of posterior samples of ASVs proportions.
taxonomylevel	Character. Use to label ASVs.
thresholdASVprop	Numberic. Use to select ASVs for circular plot.

Value

A ggplot2 object. A circular plot annotated with phylogenetic tree.

PratheepaJ/diffTop documentation built on Dec. 18, 2021, 7:48 a.m.