psE: "phyloseq" object for the data published in Fitzpatrick et...

In PratheepaJ/diffTop: Differential topic analysis using latent Dirichlet allocation

Description

A 'phyloseq' class object with 6929 taxa in 111 samples that are from seven rounds of six-fold dilutions (1:1 up to 1:279,936) from standard ZymoBIOMICS microbial community and 10 negative extraction controls.

Usage

psE

Format

An object of class 'phyloseq'.

SampleType

Whether Asteraceae or non-Asteraceae

pna

Type of pPNA used universal or Asteraceae-modified

species_names

Sample ID

Source

Fitzpatrick et al. (2018)

Examples

## Not run: 
sample_data(psE)
otu_table(psE)

## End(Not run)

PratheepaJ/diffTop documentation built on Dec. 18, 2021, 7:48 a.m.