alignmentMatrix: aligned topics across chains

In PratheepaJ/diffTop: Differential topic analysis using latent Dirichlet allocation

Description

aligned topics across chains

Usage

alignmentMatrix(
  theta,
  ps,
  K,
  iterUse = 1000,
  chain = 4,
  SampleID_name = "SampleID"
)

Arguments

theta	array. three dimensional array (iterations * samples * topic).
ps	phyloseq object.
K	integer. number of topics.
iterUse	integer. number of iterations used in each chain after subtracting warm-up samples.
chain	integer. number of chains used in MCMC.
SampleID_name	character. variable name that contains sample IDs.

Value

matrix. A matrix of topic assignment for each chain.

PratheepaJ/diffTop documentation built on Dec. 18, 2021, 7:48 a.m.