biomodModelingWrapper: BIOMOD_Modeling wrapper

In PredictiveEcology/LandR: Landscape Ecosystem Modelling in R

BIOMOD_Modeling wrapper

Description

BIOMOD_Modeling wrapper

Usage

biomodModelingWrapper(
  sp,
  responseVar,
  responseVarData,
  predictorVars,
  predictorVarsData,
  dir.name,
  BIOMOD_ModelingArgs = list(models = c("GLM", "MARS"), bm.options = NULL, CV.k = 5,
    CV.perc = 100, metric.eval = c("TSS", "ROC"), modeling.id = "test"),
  ...
)

Arguments

sp	character of species name to subset responseVarData table
responseVar	character vector, or list of character vectors, of response variable (column) to subset responseVarData table. If a list, it should be named according to sp, for subsetting.
responseVarData	a data.table or list of data.tables with environmental data. If a list, it should be named according to sp, for subsetting.#'
predictorVars	character vector, or list of character vectors, of environmental variables (columns) to subset predictorVarsData table. If a list, it should be named according to sp, for subsetting.
predictorVarsData	environmental data.
dir.name	passed to biomod2::BIOMOD_FormatingData
BIOMOD_ModelingArgs	a named list of arguments passed to biomod2::BIOMOD_Modeling
...	further arguments passed to reproducible::Cache

PredictiveEcology/LandR documentation built on June 7, 2024, 4:16 p.m.