Files in PredictiveEcology/LandR
Landscape Ecosystem Modelling in R
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
.lintr
DESCRIPTION
LICENSE
LandR.Rproj
NAMESPACE
NEWS.md
R/LANDIS-II-tables.R
R/LandR-package.R
R/assertions.R
R/biomodWrappers.R
R/biosim.R
R/chooseName.R
R/cohorts.R
R/convertUnwantedLCC2.R
R/dem.R
R/disturbances.R
R/ecoregions.R
R/ecozones.R
R/fireSeverity.R
R/light-shade.R
R/makeDummyInputs.R
R/maps.R
R/maxBestimation.R
R/misc.R
R/nullClimate.R
R/overlayLCCs.R
R/partitionBiomass.R
R/plot_summaries.R
R/plotting.R
R/prepEcoregions.R
R/prepInputObjects.R
R/prepInputs_NTEMS.R
R/prepSpeciesLayers.R
R/seedDispersalLANDIS.R
R/serotiny-resprouting.R
R/speciesPresentFromKNN.R
R/speciesTable.R
R/sppEquivalencies_CA.R
R/sppHarmonize.R
R/studyArea.R
R/terra-raster-utils.R
R/wildfire.R
R/zzz.R
README.md
_pkgdown.yml
codecov.yml
data-raw/sppEquivalencies_CA.R
data-raw/sppEquivalencies_CA.csv
data/sppEquivalencies_CA.rda
inst/WORDLIST
man-roxygen/FireDisturbance.R
man-roxygen/Nreps.R
man-roxygen/burnedPixelCohortData.R
man-roxygen/cacheTags.R
man-roxygen/calibrate.R
man-roxygen/cohortData.R
man-roxygen/cohortDefinitionCols.R
man-roxygen/colsForPixelGroups.R
man-roxygen/currentTime.R
man-roxygen/destinationPath.R
man-roxygen/doAssertion.R
man-roxygen/ecoregionMap.R
man-roxygen/initialB.R
man-roxygen/minRelativeB.R
man-roxygen/newPixelCohortData.R
man-roxygen/pixelCohortData.R
man-roxygen/pixelGroupMap.R
man-roxygen/postFirePixelCohortData.R
man-roxygen/postFireRegenSummary.R
man-roxygen/rasterToMatch.R
man-roxygen/rasterToMatchLarge.R
man-roxygen/rstLCC.R
man-roxygen/species.R
man-roxygen/speciesEcoregion.R
man-roxygen/speciesLayers.R
man-roxygen/speciesTable.R
man-roxygen/sppColorVect.R
man-roxygen/sppEquiv.R
man-roxygen/sppEquivCol.R
man-roxygen/sppNameVector.R
man-roxygen/standAgeMap.R
man-roxygen/startTime.R
man-roxygen/studyArea.R
man-roxygen/studyAreaName.R
man-roxygen/successionTimestep.R
man-roxygen/sufficientLight.R
man-roxygen/summary_plots.R
man-roxygen/treedFirePixelTableSinceLastDisp.R
man-roxygen/vegLeadingProportion.R
man-roxygen/verbose.R
man/BioSIM_extractPoints.Rd
man/BioSIM_getMPBSLR.Rd
man/BioSIM_getWindAnnual.Rd
man/BioSIM_getWindMonthly.Rd
man/CASFRItoSpRasts.Rd
man/Colors.Rd
man/Disturbances.Rd
man/LANDISDisp.Rd
man/LandR-deprecated.Rd
man/LandR-package.Rd
man/NAcover2zero.Rd
man/WardKernel.Rd
man/addNoPixel2CohortData.Rd
man/addPixels2CohortData.Rd
man/aggregateRasByDT.Rd
man/asInteger.Rd
man/assertPostPartialDist.Rd
man/assertions.Rd
man/assignLightProb.Rd
man/biomodEnsembleFrcstWrapper.Rd
man/biomodEnsembleProjMaps.Rd
man/biomodEnsembleWrapper.Rd
man/biomodModelingWrapper.Rd
man/biomodProjWrapper.Rd
man/calcSeverityB.Rd
man/calcSiteShade.Rd
man/calculateClimateEffect.Rd
man/checkSpeciesTraits.Rd
man/columnsForPixelGroups.Rd
man/compare.Rd
man/convertUnwantedLCC.Rd
man/convertUnwantedLCC2.Rd
man/defineFlammable.Rd
man/describeCohortData.Rd
man/doResprouting.Rd
man/doSerotiny.Rd
man/dot-MLLMaxBPartialPlotData.Rd
man/dot-MLLMaxBplotData.Rd
man/dot-createCohortData.Rd
man/dot-fitNLMwCovariates.Rd
man/dot-getMaxBCoefs.Rd
man/dot-interpolateLightProb.Rd
man/dot-logFloor.Rd
man/dot-overlay.Rd
man/dot-speciesTableColNames.Rd
man/dropTerm.Rd
man/dummy-inputs.Rd
man/ecoregionProducer.Rd
man/equivalentName.Rd
man/extractMaxB.Rd
man/fasterizeFromSp.Rd
man/fitNLMModels.Rd
man/genPGsPostDisturbance.Rd
man/generatePixelGroups.Rd
man/genericExtract.Rd
man/getWildfire_NFI.Rd
man/ggplotMLL_maxB.Rd
man/installBioSIM.Rd
man/landisIIrepo.Rd
man/loadCASFRI.Rd
man/loadkNNSpeciesLayers.Rd
man/makeAndCleanInitialCohortData.Rd
man/makeBiomassMap.Rd
man/makeCohortDataFiles.Rd
man/makeEcoregionDT.Rd
man/makeEcoregionMap.Rd
man/makeMinRelativeB.Rd
man/makePickellStack.Rd
man/makePixelGroupMap.Rd
man/makePixelTable.Rd
man/makeSpeciesEcoregion.Rd
man/mergeSppRaster.Rd
man/minRelativeBDefaults.Rd
man/modifySpeciesAndSpeciesEcoregionTable.Rd
man/nonForestedPixels.Rd
man/overlayLCCs.Rd
man/overlayStacks.Rd
man/partialggplotMLL_maxB.Rd
man/partitionBiomass.Rd
man/pixelFate.Rd
man/pkgEnv.Rd
man/plantNewCohorts.Rd
man/plotLeadingSpecies.Rd
man/plotSpatial.Rd
man/plotVTM.Rd
man/prepEcoregions.Rd
man/prepEcozonesRst.Rd
man/prepInputsCanDEM.Rd
man/prepInputsEcoregion.Rd
man/prepInputsFireYear.Rd
man/prepInputsLCC.Rd
man/prepInputsSpecies.Rd
man/prepInputsSpeciesEcoregion.Rd
man/prepInputsStandAgeMap.Rd
man/prepInputs_NTEMS_LCC_FAO.Rd
man/prepInputs_NTEMS_Nonforest.Rd
man/prepRasterToMatch.Rd
man/prepRawBiomassMap.Rd
man/prepSpeciesLayers.Rd
man/randomStudyArea.Rd
man/rasterRead.Rd
man/rasterTerraHelpers.Rd
man/replaceAgeInFires.Rd
man/resample.Rd
man/rescale.Rd
man/rmMissingCohorts.Rd
man/scheduleDisturbance.Rd
man/speciesEcoregionLatestYear.Rd
man/speciesEcoregionStack.Rd
man/speciesPresent.Rd
man/speciesTable.Rd
man/speciesTableUpdate.Rd
man/sppColors.Rd
man/sppEquivCheck.Rd
man/sppEquivalencies_CA.Rd
man/sppHarmonize.Rd
man/standAgeMapGenerator.Rd
man/statsModel.Rd
man/subsetDT.Rd
man/sumRastersBySpecies.Rd
man/uniqueDefinitions.Rd
man/updateCohortData.Rd
man/updateCohortDataPostHarvest.Rd
man/updateSpeciesTable.Rd
man/vegTypeGenerator.Rd
man/vegTypeMapGenerator.Rd
tests/testthat.R
tests/testthat/test-compareRas.R
tests/testthat/test-loadkNNSpeciesLayers.R
tests/testthat/test-prepRawBiomassMap.R
tests/testthat/test-speciesTable.R
tests/testthat/test-wardDispersalFunction.R
