plotVTM: Summary plots of leading vegetation types

In PredictiveEcology/LandR: Landscape Ecosystem Modelling in R

Summary plots of leading vegetation types

Description

Create raster of leading vegetation types and Plot a bar chart summary and a vegetation type map. NOTE: plot order will follow colors order.

Usage

plotVTM(
  speciesStack = NULL,
  vtm = NULL,
  vegLeadingProportion = 0.8,
  sppEquiv,
  sppEquivCol,
  colors,
  title = "Leading vegetation types"
)

Arguments

speciesStack	A SpatRaster, RasterStack or RasterBrick of percent-cover-by-species layers.
vtm	An optional vegetation type map (RasterLayer or SpatRaster). If not supplied, will be produced internally by makeVegTypeMap.
vegLeadingProportion	Numeric between 0-1, determining the relative biomass threshold a species needs to pass to be considered "leading".
sppEquiv	table with species name equivalencies between the kNN and final naming formats. See data("sppEquivalencies_CA", "LandR"). For functions that have mixedType, this only necessary if mixedType == 2. If not provided and mixedType == 2, will attempt to use data("sppEquivalencies_CA", "LandR").
sppEquivCol	the column name to use from sppEquiv. For functions that have mixedType, only necessary if mixedType == 2. If not provided and mixedType == 2, will attempt to use "Boreal".
colors	Named vector of colour codes, named using species names. NOTE: plot order will follow this order.
title	The title to use for the generated plots.

Author(s)

Eliot McIntire

PredictiveEcology/LandR documentation built on June 7, 2024, 4:16 p.m.