Man pages for PredictiveEcology/LandR
Landscape Ecosystem Modelling in R
| addNoPixel2CohortData | Add number of pixels per 'pixelGroup' and add it has a new... |
| addPixels2CohortData | Generate 'cohortData' table per pixel: |
| asInteger | Convert numeric values to rounded integers |
| assertions | Assertions |
| assertSpeciesEcoregionCohortDataMatch | Assert that the 'cohortData' 'speciesEcoregion' have matching... |
| assignLightProb | Assign light probability |
| calcSiteShade | Calculate site shade |
| calculateClimateEffect | Null climate effect |
| CASFRItoSpRasts | 'CASFRItoSpRasts' |
| checkSpeciesTraits | Check if all species in have trait values |
| columnsForPixelGroups | Default columns that define pixel groups |
| convertUnwantedLCC | Convert Land Cover Classes (LCC) to another value in its... |
| defineFlammable | Define flammability map |
| describeCohortData | Summary for 'cohortData' |
| doResprouting | Activate resprouting after a (fire) disturbance |
| doSerotiny | Activate serotiny after a (fire) disturbance |
| dot-cleanLandWebStudyArea | Clean up the LandWeb study area from David Andison |
| dot-createCohortData | Generate template 'cohortData' table |
| dot-interpolateLightProb | Find interpolated value of light probability |
| dot-logFloor | Log-transformed values, with a floor (> 0) |
| dot-overlay | Overlaying function |
| dot-speciesTableColNames | Species Table Column Names |
| dummy-inputs | Create dummy inputs for test simulations |
| ecoregionProducer | Make 'ecoregionMap' and 'ecoregion' table |
| equivalentName | Return equivalent name from a 'data.frame' of equivalencies |
| fasterizeFromSp | Rasterize polygons using 'fasterize' |
| generatePixelGroups | Add the correct 'pixelGroups' to a 'pixelDataTable' object |
| landisIIrepo | Default LANDIS-II project repo url |
| LandR-deprecated | Make a vegetation type map from a stack of species abundances |
| LandR-package | 'LandR' package |
| loadCASFRI | Load CASFRI data |
| loadkNNSpeciesLayers | Load kNN species layers from online data repository |
| loadkNNSpeciesLayersValidation | Load kNN species layers from online data repository |
| makeAndCleanInitialCohortData | Generate initial 'cohortData' table |
| makeBiomassMap | Create 'biomassMap' |
| makeCohortDataFiles | Make the 'cohortData' table, while modifying the temporary... |
| makeEcoregionDT | Make the 'ecoregion' table |
| makeEcoregionMap | Make the 'ecoregionMap' raster |
| makeMinRelativeB | Create 'minRelativeB' table |
| makePickellStack | 'makePickellStack' |
| makePixelGroupMap | Create 'makePixelGroupMap' |
| makePixelTable | Make 'pixelTable' from biomass, age, land-cover and species... |
| makeSpeciesEcoregion | Create 'speciesEcoregion' |
| mergeSppRaster | Merge species percent-cover rasters |
| overlayLCCs | Overlay different LCC data sources |
| overlayStacks | Overlay layers within raster stacks |
| pixelFate | Create or amend data to a 'pixelFateDT' object |
| pkgEnv | The 'LandR' package environment |
| plantNewCohorts | Create new cohorts based on provenance table with unique... |
| plotVTM | Summary plots of leading vegetation types |
| polygonClean | Do an arbitrary set of operations on a polygon |
| prepEcoregions | Prepare ecoregions objects |
| prepInputsEcoregion | Prepare ecoregion table |
| prepInputsLCC | Simple 'prepInputs' for LCC2005 or LCC2010 data |
| prepInputsSpecies | Download and prepare a species traits table for use with... |
| prepInputsSpeciesEcoregion | Prepare species ecoregion table |
| prepSpeciesLayers | Prepare species layers |
| randomStudyArea | Create default study areas for use with LandR modules |
| resample | Resample |
| rmMissingCohorts | Remove missing cohorts from 'cohortData' based on... |
| scheduleDisturbance | Test whether disturbance should be scheduled |
| speciesEcoregionLatestYear | Pull out the values from 'speciesEcoregion' table for current... |
| speciesTable | Download and prepare a species traits table for use with... |
| speciesTableUpdate | Change species table of parameters/traits |
| sppColors | Create species colour vector from a 'sppEquiv' table |
| sppEquivalencies_CA | Table of species name equivalencies for Canadian trees |
| statsModel | The generic statistical model to run ('lmer' or 'glmer') |
| subsetDT | Subset a 'data.table' with random subsampling within 'by'... |
| sumRastersBySpecies | Function to sum rasters of species layers |
| uniqueDefinitions | The columns in a 'cohortData' that define "unique" |
| updateCohortData | Add cohorts to 'cohortData' and 'pixelGroupMap' |
| updateCohortDataPostHarvest | Add cohorts to 'cohortData' and 'pixelGroupMap' |
| updateSpeciesTable | Customize species trait table values |
| vegTypeGenerator | Generate and add vegetation type column to 'cohortData' |
| vegTypeMapGenerator | Generate vegetation type map |
