prepSpeciesLayers: Prepare species layers

In PredictiveEcology/LandR: Landscape Ecosystem Modelling in R

Prepare species layers

Description

TODO: description needed

Usage

prepSpeciesLayers_KNN(
  destinationPath,
  outputPath,
  url = NULL,
  studyArea,
  rasterToMatch,
  sppEquiv,
  sppEquivCol,
  thresh = 10,
  ...
)

prepSpeciesLayers_CASFRI(
  destinationPath,
  outputPath,
  url = NULL,
  studyArea,
  rasterToMatch,
  sppEquiv,
  sppEquivCol,
  ...
)

prepSpeciesLayers_Pickell(
  destinationPath,
  outputPath,
  url = NULL,
  studyArea,
  rasterToMatch,
  sppEquiv,
  sppEquivCol,
  ...
)

prepSpeciesLayers_ForestInventory(
  destinationPath,
  outputPath,
  url = NULL,
  studyArea,
  rasterToMatch,
  sppEquiv,
  sppEquivCol,
  ...
)

prepSpeciesLayers_MBFRI(
  destinationPath,
  outputPath,
  url = NULL,
  studyArea,
  rasterToMatch,
  sppEquiv,
  sppEquivCol,
  ...
)

prepSpeciesLayers_ONFRI(
  destinationPath,
  outputPath,
  url = NULL,
  studyArea,
  rasterToMatch,
  sppEquiv,
  sppEquivCol,
  ...
)

Arguments

destinationPath	path to data directory where objects will be downloaded or saved to
outputPath	TODO: description needed
url	if NULL, the default, use the default source url
studyArea	A ⁠SpatialPolygons*⁠ object used as the principle study region, passed to reproducible::prepInputs().
rasterToMatch	A RasterLayer objects to use as the template for all subsequent raster operations (i.e., the one used throughout the simulation).
sppEquiv	table with species name equivalencies between the kNN and final naming formats. See data("sppEquivalencies_CA", "LandR"). For functions that have mixedType, this only necessary if mixedType == 2. If not provided and mixedType == 2, will attempt to use data("sppEquivalencies_CA", "LandR").
sppEquivCol	the column name to use from sppEquiv. For functions that have mixedType, only necessary if mixedType == 2. If not provided and mixedType == 2, will attempt to use "Boreal".
thresh	threshold \ If at least one pixel has cover >= thresh , the species is considered "present". Otherwise the raster is excluded from the output. Defaults to 10.
...	other arguments, used for compatibility with other prepSpeciesLayers functions.

Value

TODO: description needed

PredictiveEcology/LandR documentation built on June 7, 2024, 4:16 p.m.